Abstract: Suffix array is a simple and powerful alternative to suffix trees in genome analysis, string matching and text compression. Many efforts have been made to construct suffix array in a faster ...

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Suffix trees are fundamental data structures in stringology and have wide applications across various domains. In this work, we propose two linear-time algorithms for indexing strings under each ...

Suffix arrays serve as a fundamental tool in string processing by indexing all suffixes of a text in lexicographical order, thereby facilitating fast pattern searches, text retrieval, and genome ...

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Hello, I am trying to build a genome index for GRCh38.p12 genome and everything is fine until it reaches the generating suffix array step at which it gets killed. I know that genome indexing takes a ...

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In the field of genome assembly, contig assembly is one of the most important parts. Contig assembly requires the processing of overlapping regions of a large number of DNA sequences and this ...